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Software: The BioCatalog Yellow BAGI Archives for Biological Software and Databases Around the World. MolBiology Software, List of software for molecular biology. Multi-databases browsers: ACNUC. SRS WWW (Oslo, EBI) NIH GenoBase. Protein sequences: SWISS-PROT. OWL. PIR. Protein structures: SCOP. PDB (RCSB). Nucleotide sequences: EMBL, EBI. GenBank, NCBI. DDBJ, Japan. Transcription factors: TRANSFAC Patterns/families: PROSITE Pfam PRODOM. BLOCKS. PRINTS. Domo. ProtFam (MIPS homepage). SBASE, Segment BASE. PROCLASS Structure based classifications: Tree classification of PDB (by Alexandrov and Fischer using SARF2). CATH Protein Structure Classification SCOP Structural Classification of Proteins. PDB chain clustering produced by Fischer et al. Misc.: FlyBase GeneCards Lists of databases: LiMB (gopher). BioDatabases List. Biozon Biofox Gramene  Longer list Services (programs on-line): Pratt - pattern discovery online Expression Profiler - online tool for expression profile clustering and sequence pattern discovery Database searches, EBI (Fasta, Blitz,...). Database searches at DISC (Japan) -- includes Fasta, BLAST, MPsrch and SRS Fasta Biologist's Control Panel (Baylor college of medicine). BCM Search Launcher searches, alignments. SAM, Sequence alignment and modeling system (using HMMs). Match sequence against PROSITE. AMAS Analysis of multiple alignments (Geoff Barton). MSA multiple sequence alignment. PredictProtein , Heidelberg. PSA, Protein Sequence Analysis: fits a structure model to your sequence. Sequence analysis tools, PDB, including multiple sequence alignment. MEME, motif discovery tool. Block Maker, at Fred Hutchinson Cancer Research Center. Bioinformation Search Center Longer list Tools information: J-Express, a tool for analysing microarray gene expression data Clustal W multiple sequence alignment. Phylip, phylogenetic analysis. Pratt, pattern discovery. GCG, Wisconsin Sequence Analysis Package Program Manual. PROPHET, UNIX based software package for data analysis. RasMol, free program which displays molecular structures. MolScript, program for creating molecular graphics in the form of PostScript plot files. PairWise and SearchWise, Ewan Birney's excellent tools for sequence alignment and search. MEME, Multiple EM for Motif Elicitation Primer3 Primer3 Oligodesign interface Journals on the Web: Journal of Genetics. Journal of Computational Biology. Bioinformatics, Bioinformatics Online CABIOS Protein Science. Proteins: Structure, Function and Genetics Genome Research Nature, Genome Gateway Nucleic Acids Research Journal of Molecular Biology. The Bioinformer, published by EBI. In Silico Biology, online journal PubMed, database of journals. Bioinform IDEAL, International Digital Electronic Access Library - online abstracts.  Protocols:            Cell and Mol. Biol. Online            Hanson Lab Protocol           Cornell Small Grains Lab Protocol          Commonly used Mol. Biol. Reagents            Protocol Online            Arizona Lab Protocol Useful Laboratory Tips for Calculation/Conversion:    Useful Conversion       Unit conversion calculator      Molecular weight calculation       Oligonucleotide calculator      Oligo calculator       Online calculator        Chemical dilution calculator       LabVelocity Calculator Some Interesting Papers: The second article was published in Nature Reviews Genetics and is entitled, “Genomic medicine and developing countries: creating a room of their own”, focuses on our work in Mexico, India and Thailand where we describe how large-scale population genotyping projects are being adopted to improve public health and create knowledge-based economies. Séguin B., Hardy B., Singer P.A., Daar A.S. Genomic medicine and developing countries: creating a room of their own. Nature Rev. Genet.9, 487-93 (2008). Click the link below to the Nature Reviews Genetics website to access the article: http://cts.vresp.com/c/?MRCGLOBALHEALTH/73953b01fe/b14324d955/f8d58354b1 Rahim Rezaie, Sarah E Frew, Stephen M Sammut, Maya R Maliakkal, Abdallah S Daar and Peter A  Singer. (2008) "Brazilian health biotech - fostering crosstalk between,public and private sectors" Nature Biotechnology Vol. 26. No. 6 pp 627-644. Click the link below to read the paper: http://cts.vresp.com/c/?MRCGLOBALHEALTH/73953b01fe/b14324d955/4b0fa14509 Click the link below to read the press release: http://cts.vresp.com/c/?MRCGLOBALHEALTH/73953b01fe/b14324d955/9d8cee1270 This article builds on MRC’s two earlier papers on health biotechnology in the emerging economies of India and China. See the links below for these papers. India: http://cts.vresp.com/c/?MRCGLOBALHEALTH/73953b01fe/b14324d955/0fa1d93980 China: http://cts.vresp.com/c/?MRCGLOBALHEALTH/73953b01fe/b14324d955/4598837175 We hope you enjoy these recent publications from the McLaughlin-Rotman Centre for Global Health and we invite you to provide feedback on and participate in discussions on this paper and on other global health issues at our Facebook Page: Global Heath Engage.         GII Copyright 2008 and disclaimer. The GII website is hosted by Suruchi.